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A Missing Ninja/Shinobi is a ninja that has betrayed an allied ninja by killing them in a War Zone.

Once a Ninja becomes "Missing" they can no longer receive daily missions from the village they were previously aligned to. Instead they have to receive missions from Daimyo in Takumi Village.

These Missions are more dangerous and usually require the player to kill another ninja from either the Leaf Village or the Sand Village.

As well as different missions, Missing Ninja also can kill and collect Bounties for killing Sand, Leaf and Missing Shinobi, unlike an allied shinobi who cannot kill their own.